Genotoxicity Profiling

An unbiased, whole-genome, single-cell view of structure, clonality, ploidy, and genomic stability. 

Application: Genotoxicity Profiling

Genotoxicity profiling provides confidence that edit strategies or cell manipulations are optimized and that manufacturing processes do not introduce genomic changes that could compromise regulatory success or patient safety.

Why it Matters

  • Detecting Unintentional DNA Damage
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    Ensure therapies do not introduce:
    • Harmful mutations
    • Chromosomal breaks
    • Large-scale rearrangements
  • Identifying Off-Target Editing Effects
    Diagnostic Report
    For CRISPR/Cas, TALENs, viral vectors, transposons, and other platforms, teams need visibility into:
    • Unexpected insertions or deletions
    • Variable copy number
    • Structural variants
    • Chromosomal abnormalities
  • Meeting IND/CTA Regulatory Expectations
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    FDA and EMA expect clear evidence that potential genotoxic effects are understood and controlled—especially for:
    • Cell and gene therapy programs
    • Viral vector-based approaches
  • Confirming Vector Integration Safety
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    For lentivirus, retrovirus, and even non-integrating systems like AAV, teams must demonstrate:
    • Integration patterns are non-disruptive
    • No proximity to oncogenic regions
    • No large-scale genomic instability
  • Long-Term Genome Stability in Manufactured Cells
    Genomic Data
    Critical for programs involving:
    • Engineered cell lines
    • iPSC-derived cells
    • CAR-T and TCR therapies

    Teams need confidence that expansion, editing, freezing, and downstream processing have not introduced instability.

  • De-Risking Cancer Formation
    Medical Research
    Especially important for stem-cell–derived therapies, where early detection of structural abnormalities reduces downstream risk.
  • Understanding Manufacturing Performance
    Test Result
    When cells show poor growth, viability, or drift, genotoxicity profiling reveals:
    • Structural variants
    • Integration-related disruptions
    • Chromosomal abnormalities
  • Comparing Engineering Approaches
    Sample Collection
    Directly compare genomic outcomes across:
    • CRISPR vs. base editing
    • Lentiviral vs. transposon delivery

Applicable KROMASURE™ Solutions:

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GLP and GMP Services

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From Research to Batch Release Testing

KROMATID’s GLP & GMP Services support your pipeline from the research phase, through IND filing, to batch release testing.

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